Mitsutake, Ayori: search on Z-Library

The world's largest scientific articles store. 70,000,000+ articles for free.

Don't use scam websites

1

Dynamical Analysis Methods for Protein Folding Simulations

Mitsutake, Ayori, Takano, Hiroshi

Journal:

Biophysical Journal

Year:

2018

File:

PDF, 41 KB

2018

2

Generalized-ensemble algorithms for molecular simulations of biopolymers

Ayori Mitsutake, Yuji Sugita, Yuko Okamoto

Journal:

Year:

2001

Language:

english

File:

PDF, 671 KB

english, 2001

3

A pH-dependent variation in α-helix structure of the S-peptide of ribonuclease A studied by Monte Carlo simulated annealing

Takashi Nakazawa, Sumiko Ban, Yuka Okuda, Masato Masuya, Ayori Mitsutake, Yuko Okamoto

Journal:

Year:

2002

Language:

english

File:

PDF, 386 KB

english, 2002

4

A method for calculating the eigenvalues of large Hermitian matrices by second-order recursion formulae

Ayori Mitsutake, Toshiaki Iitaka, Yuko Okamoto

Journal:

Computer Physics Communications

Year:

1996

Language:

english

File:

PDF, 679 KB

english, 1996

5

Multi-dimensional multicanonical algorithm, simulated tempering, replica-exchange method, and all that

Ayori Mitsutake, Yoshiharu Mori, Yuko Okamoto

Journal:

Physics Procedia

Year:

2010

Language:

english

File:

PDF, 1.03 MB

english, 2010

6

Replica-exchange simulated tempering method for simulations of frustrated systems

Ayori Mitsutake, Yuko Okamoto

Journal:

Chemical Physics Letters

Year:

2000

Language:

english

File:

PDF, 211 KB

english, 2000

7

α-Helix propensities of homo-oligomers in aqueous solution studied by multicanonical algorithm

Ayori Mitsutake, Yuko Okamoto

Journal:

Chemical Physics Letters

Year:

1999

Language:

english

File:

PDF, 135 KB

english, 1999

8

Generalized-ensemble simulations of spin systems and protein systems

Takehiro Nagasima, Yuji Sugita, Ayori Mitsutake, Yuko Okamoto

Journal:

Computer Physics Communications

Year:

2002

Language:

english

File:

PDF, 197 KB

english, 2002

9

Temperature dependence of distributions of conformations of a small peptide

Ayori Mitsutake, Ulrich H.E. Hansmann, Yuko Okamoto

Journal:

Journal of Molecular Graphics and Modelling

Year:

1998

Language:

english

File:

PDF, 542 KB

english, 1998

10

Molecular dynamics of C-peptide of ribonuclease A studied by replica-exchange Monte Carlo method and diffusion theory

Giovanni La Penna, Ayori Mitsutake, Masato Masuya, Yuko Okamoto

Journal:

Chemical Physics Letters

Year:

2003

Language:

english

File:

PDF, 278 KB

english, 2003

11

Multicanonical algorithm combined with the RISM theory for simulating peptides in aqueous solution

Ayori Mitsutake, Masahiro Kinoshita, Yuko Okamoto, Fumio Hirata

Journal:

Chemical Physics Letters

Year:

2000

Language:

english

File:

PDF, 491 KB

english, 2000

12

New Computational Approach to Determine Liquid–Solid Phase Equilibria of Water Confined to Slit Nanopores

Kaneko, Toshihiro, Bai, Jaeil, Yasuoka, Kenji, Mitsutake, Ayori, Zeng, Xiao Cheng

Journal:

Journal of Chemical Theory and Computation

Year:

2013

Language:

english

File:

PDF, 4.80 MB

english, 2013

13

Relaxation Mode Analysis for a Peptide

Mitsutake, Ayori

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 34 KB

english, 2014

14

Size-Dependent Phase Changes in Water Clusters

Kaneko, Toshihiro, Akimoto, Takuma, Yasuoka, Kenji, Mitsutake, Ayori, Zeng, Xiao Cheng

Journal:

Journal of Chemical Theory and Computation

Year:

2011

Language:

english

File:

PDF, 2.55 MB

english, 2011

15

Combination of the Replica-Exchange Monte Carlo Method and the Reference Interaction Site Model Theory for Simulating a Peptide Molecule in Aqueous Solution

Mitsutake, Ayori, Kinoshita, Masahiro, Okamoto, Yuko, Hirata, Fumio

Journal:

Journal of Physical Chemistry B

Year:

2004

Language:

english

File:

PDF, 577 KB

english, 2004

16

Helix-coil transitions of amino-acid homo-oligomers in aqueous solution studied by multicanonical simulations

Mitsutake, Ayori, Okamoto, Yuko

Journal:

The Journal of Chemical Physics

Year:

2000

Language:

english

File:

PDF, 523 KB

english, 2000

17

Relaxation mode analysis of a peptide system: Comparison with principal component analysis

Mitsutake, Ayori, Iijima, Hiromitsu, Takano, Hiroshi

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 1.91 MB

english, 2011

18

Replica-exchange multicanonical and multicanonical replica-exchange Monte Carlo simulations of peptides. II. Application to a more complex system

Mitsutake, Ayori, Sugita, Yuji, Okamoto, Yuko

Journal:

The Journal of Chemical Physics

Year:

2003

Language:

english

File:

PDF, 651 KB

english, 2003

19

From multidimensional replica-exchange method to multidimensional multicanonical algorithm and simulated tempering

Mitsutake, Ayori, Okamoto, Yuko

Journal:

Physical Review E

Year:

2009

Language:

english

File:

PDF, 305 KB

english, 2009

20

Replica-exchange multicanonical and multicanonical replica-exchange Monte Carlo simulations of peptides. I. Formulation and benchmark test

Mitsutake, Ayori, Sugita, Yuji, Okamoto, Yuko

Journal:

The Journal of Chemical Physics

Year:

2003

Language:

english

File:

PDF, 467 KB

english, 2003

21

Liquid-solid and solid-solid phase transition of monolayer water: High-density rhombic monolayer ice

Kaneko, Toshihiro, Bai, Jaeil, Yasuoka, Kenji, Mitsutake, Ayori, Zeng, Xiao Cheng

Journal:

The Journal of Chemical Physics

Year:

2014

Language:

english

File:

PDF, 1.04 MB

english, 2014

22

Replica-exchange extensions of simulated tempering method

Mitsutake, Ayori, Okamoto, Yuko

Journal:

The Journal of Chemical Physics

Year:

2004

Language:

english

File:

PDF, 1.66 MB

english, 2004

23

Simulated-tempering replica-exchange method for the multidimensional version

Mitsutake, Ayori

Journal:

The Journal of Chemical Physics

Year:

2009

Language:

english

File:

PDF, 1.90 MB

english, 2009

24

A solvation-free-energy functional: A reference-modified density functional formulation

Sumi, Tomonari, Mitsutake, Ayori, Maruyama, Yutaka

Journal:

Journal of Computational Chemistry

Year:

2015

Language:

english

File:

PDF, 377 KB

english, 2015

25

Multidimensional generalized-ensemble algorithms for complex systems

Mitsutake, Ayori, Okamoto, Yuko

Journal:

The Journal of Chemical Physics

Year:

2009

Language:

english

File:

PDF, 1.43 MB

english, 2009

26

[AIP SLOW DYNAMICS IN COMPLEX SYSTEMS: 3rd International Symposium on Slow Dynamics in Complex Systems - Sendai (Japan) (3-8 November 2003)] AIP Conference Proceedings - Generalized-Ensemble Monte Carlo Algorithms for Simulations of Proteins

Mitsutake, Ayori

Year:

2004

Language:

english

File:

PDF, 264 KB

english, 2004

27

[ASME ASME/JSME 2011 8th Thermal Engineering Joint Conference - Honolulu, Hawaii, USA (March 13–17, 2011)] ASME/JSME 2011 8th Thermal Engineering Joint Conference - Multicanonical Molecular Dynamics Simulation Study of the Liquid-Solid and Solid-Solid Transitions in Lennard-Jones Clusters

Kaneko, Toshihiro, Yasuoka, Kenji, Mitsutake, Ayori, Zeng, Xiao Cheng

Year:

2011

Language:

english

File:

PDF, 232 KB

english, 2011

28

Erratum: “A solvation-free-energy functional: A reference-modified density functional formulation” [J. Comput. Chem. 2015, 36, 1359-1369]

Sumi, Tomonari, Mitsutake, Ayori, Maruyama, Yutaka

Journal:

Journal of Computational Chemistry

Year:

2015

Language:

english

File:

PDF, 274 KB

english, 2015

29

Investigating Kinetics of Conformational Change using Molecular Dynamics and Milestoning

Fujisaki, Hiroshi, Mitsutake, Ayori

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 38 KB

english, 2016

30

Classification of Low-Energy Conformations of Met-Enkephalin in the Gas Phase and in a Model Solvent Based on the Extended Scaled Particle Theory

Mitsutake, Ayori, Irisa, Masayuki, Okamoto, Yuko, Hirata, Fumio

Journal:

Bulletin of the Chemical Society of Japan

Year:

1999

File:

PDF, 1.95 MB

1999

31

A reference-modified density functional theory: An application to solvation free-energy calculations for a Lennard-Jones solution

Sumi, Tomonari, Maruyama, Yutaka, Mitsutake, Ayori, Koga, Kenichiro

Journal:

The Journal of Chemical Physics

Year:

2016

Language:

english

File:

PDF, 1.06 MB

english, 2016

32

Relaxation mode analysis and Markov state relaxation mode analysis for chignolin in aqueous solution near a transition temperature

Mitsutake, Ayori, Takano, Hiroshi

Journal:

The Journal of Chemical Physics

Year:

2015

Language:

english

File:

PDF, 11.97 MB

english, 2015

33

Principal Component Relaxation Mode Analysis of an All-Atom Molecular Dynamics Simulation of Human Lysozyme

Nagai, Toshiki, Mitsutake, Ayori, Takano, Hiroshi

Journal:

Journal of the Physical Society of Japan

Year:

2013

Language:

english

File:

PDF, 2.27 MB

english, 2013

34

Improved Relaxation Mode Analysis of a Hen Egg-White Lysozyme Protein

Karasawa, Naoyuki, Mitsutake, Ayori, Takano, Hiroshi

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 46 KB

english, 2017

35

Stability of Unfolded and Folded Protein Structures Using a 3D-RISM with the RMDFT

Maruyama, Yutaka, Mitsutake, Ayori

Journal:

Journal of Physical Chemistry B

Year:

2017

Language:

english

File:

PDF, 2.13 MB

english, 2017

36

Application of reference-modified density functional theory: Temperature and pressure dependences of solvation free energy

Sumi, Tomonari, Maruyama, Yutaka, Mitsutake, Ayori, Mochizuki, Kenji, Koga, Kenichiro

Journal:

Journal of Computational Chemistry

Year:

2017

Language:

english

File:

PDF, 1.50 MB

english, 2017

37

Analysis of Structural Stability of Chignolin

Maruyama, Yutaka, Mitsutake, Ayori

Journal:

Journal of Physical Chemistry B

Year:

2018

Language:

english

File:

PDF, 5.95 MB

english, 2018

38

Multibaric–Multithermal Ensemble Study of Liquid–Solid Phase Transition in Lennard-Jones Particles

Kaneko, Toshihiro, Mitsutake, Ayori, Yasuoka, Kenji

Journal:

Journal of the Physical Society of Japan

Year:

2012

Language:

english

File:

PDF, 572 KB

english, 2012

39

Relaxation mode analysis for molecular dynamics simulations of proteins

Mitsutake, Ayori, Takano, Hiroshi

Journal:

Biophysical Reviews

Year:

2018

Language:

english

File:

PDF, 1.19 MB

english, 2018

40

3P043 Relaxation Mode Analysis of a protein using a Molecular Dynamics Simulation(Protein: Structure & Function,The 48th Annual Meeting of the Biophysical Society of Japan)

Nagai, Toshiki, Mitsutake, Ayori, Takano, Hiroshi

Journal:

Seibutsu Butsuri

Year:

2010

Language:

english

File:

PDF, 239 KB

english, 2010

41

2B1424 Relaxation mode analysis for simulations of protein systems(Proteins:Structure & Function II:Theory, Aggregation,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Mitsutake, Ayori, Nagai, Toshiki, Takano, Hiroshi

Journal:

Seibutsu Butsuri

Year:

2012

Language:

english

File:

PDF, 214 KB

english, 2012

42

1P022 Relaxation Mode Analysis of Chignolin at Transition Temperature(Protein: Structure & Function,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Ayori, Mitsutake, Hiroshi, Takano

Journal:

Seibutsu Butsuri

Year:

2014

Language:

english

File:

PDF, 695 KB

english, 2014

43

3P052 Analysis for the structural stability of chignolin(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Maruyama, Yutaka, Mitsutake, Ayori

Journal:

Seibutsu Butsuri

Year:

2014

Language:

english

File:

PDF, 694 KB

english, 2014

44

2P-037 Multi-dimensional simulated-tempering replica-exchange simulations of a peptide(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)

Mitsutake, Ayori

Journal:

Seibutsu Butsuri

Year:

2009

Language:

english

File:

PDF, 237 KB

english, 2009

45

Early Research in Biophysics Award—Report on the Twelfth Award Selection Process—

TAKAHASHI, Satoshi, MITSUTAKE, Ayori, SAKO, Yasushi

Journal:

Seibutsu Butsuri

Year:

2017

File:

PDF, 252 KB

2017

46

AIP Conference Proceedings [American Institute of Physics 4TH INTERNATIONAL SYMPOSIUM ON SLOW DYNAMICS IN COMPLEX SYSTEMS: Keep Going Tohoku - Sendai, Japan (2–7 December 2012)] - Effective sampling algorithms and analysis method for biomolecular simulations

Mitsutake, Ayori

Year:

2013

Language:

english

File:

PDF, 248 KB

english, 2013

47

1P-066 Relaxation Mode Analysis of a Biopolymer System by Molecular Dynamics(Protein:Measurement & Analysis, The 47th Annual Meeting of the Biophysical Society of Japan)

Nagai, Toshiki, Mitsutake, Ayori, Takano, Hiroshi

Journal:

Seibutsu Butsuri

Year:

2009

Language:

english

File:

PDF, 240 KB

english, 2009

48

Conformational change of a biomolecule studied by the weighted ensemble method: Use of the diffusion map method to extract reaction coordinates

Fujisaki, Hiroshi, Moritsugu, Kei, Mitsutake, Ayori, Suetani, Hiromichi

Journal:

The Journal of Chemical Physics

Year:

2018

Language:

english

File:

PDF, 5.52 MB

english, 2018

49

Dynamical Analysis Methods for Protein Folding Simulations

Mitsutake, Ayori, Takano, Hiroshi

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 41 KB

english, 2018

50

Folding pathways of NuG2—a designed mutant of protein G—using relaxation mode analysis

Mitsutake, Ayori, Takano, Hiroshi

Journal:

The Journal of Chemical Physics

Year:

2019

Language:

english

File:

PDF, 12.43 MB

english, 2019

To build up a library is to create a life. It’s never just a random collection of books.

— Carlos María Domínguez

Official channel

Z-Library Desktop Launcher

Z-Library Since 2009 support@z-lib.do

EnglishРусскийEspañolItalianoελληνικάاللغة العربيةBahasa IndonesiaBahasa Malaysiaहिन्दीDeutschFrançaisPortuguêsУкраїнськаPolski中文繁體中文日本語Tiếng ViệtAzərbaycan DiliՀայոց լեզուภาษาไทยTürk Diliქართველიবাংলাپښتوతెలుగుاردو한국어SrpskiБългарски